STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4002Helix-turn-helix domain protein; KEGG: ckr:CKR_2091 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (111 aa)    
Predicted Functional Partners:
cinA
TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: cce:Ccel_0674 competence/damage-inducible protein CinA; SMART: molybdopterin binding domain.
    
 0.686
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.624
Cpap_4000
PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_4298 copper amine oxidase domain protein.
 
     0.581
Cpap_4001
SMART: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein.
       0.491
Cpap_3826
Transcriptional regulator, LuxR family; KEGG: amt:Amet_1060 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
 
 0.426
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.