STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4009PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: cth:Cthe_1116 HMG-I and HMG-Y, DNA-binding. (719 aa)    
Predicted Functional Partners:
Cpap_4010
PFAM: TniB family protein; KEGG: cth:Cthe_1115 Tn7-like transposition protein C.
 
 
 0.994
Cpap_4008
PFAM: TnsA endonuclease; KEGG: tit:Thit_1877 TnsA endonuclease.
  
 0.979
Cpap_4011
KEGG: cth:Cthe_1114 Tn7-like transposition protein D.
 
   
 0.964
Cpap_4142
PFAM: transposase IS605 OrfB; KEGG: cce:Ccel_2298 transposase IS605 OrfB.
    
   0.792
Cpap_4007
KEGG: cim:CIMG_00961 hypothetical protein.
       0.588
Cpap_1568
KEGG: cth:Cthe_1254 hypothetical protein.
  
     0.522
Cpap_3584
PFAM: FMN-binding domain protein; KEGG: cce:Ccel_1394 FMN-binding domain protein.
  
     0.472
Cpap_3981
KEGG: tmt:Tmath_1866 S23 ribosomal protein.
  
     0.455
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.