STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4018PFAM: GerA spore germination protein; KEGG: cce:Ccel_1971 GerA spore germination protein. (596 aa)    
Predicted Functional Partners:
Cpap_4019
KEGG: cce:Ccel_1970 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.942
Cpap_4020
Manually curated; TIGRFAM: germination protein, Ger(x)C family; KEGG: cce:Ccel_1969 germination protein, Ger(X)C family; PFAM: spore germination B3 GerAC family protein.
 
  
 0.940
Cpap_3116
KEGG: tte:TTE2378 germination protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
  
 0.780
Cpap_4162
KEGG: cce:Ccel_2281 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
  
  
 0.778
Cpap_0036
KEGG: amt:Amet_1284 spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
  
 0.776
Cpap_4161
KEGG: cce:Ccel_2282 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
  
  
 0.774
Cpap_4021
KEGG: sth:STH2455 hypothetical protein.
       0.773
Cpap_3006
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: stage IV sporulation protein B; KEGG: cce:Ccel_1895 stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB.
  
     0.772
Cpap_0043
KEGG: cce:Ccel_0523 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
 
  
 0.771
Cpap_0109
KEGG: cth:Cthe_1021 stage IV sporulation protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
     0.771
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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