STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4024PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ckr:CKR_1611 hypothetical protein; Belongs to the 'phage' integrase family. (371 aa)    
Predicted Functional Partners:
Cpap_4025
PFAM: integrase family protein; KEGG: pth:PTH_2659 hypothetical protein.
 
     0.941
Cpap_4026
KEGG: pth:PTH_2449 hypothetical protein.
 
     0.931
Cpap_4027
PFAM: integrase family protein; KEGG: dra:DR_C0018 integrase/recombinase XerD, putative.
 
     0.844
Cpap_0419
PFAM: integrase family protein; KEGG: dau:Daud_0519 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.738
Cpap_0063
PFAM: integrase family protein; KEGG: fre:Franean1_2641 integrase family protein.
  
     0.727
Cpap_0475
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dau:Daud_0519 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.717
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
    
  0.674
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
    
  0.674
Cpap_1687
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cce:Ccel_1654 site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.447
Cpap_2161
KEGG: cce:Ccel_0090 phosphoribosyltransferase; manually curated; PFAM: phosphoribosyltransferase.
   
    0.442
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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