STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4088PFAM: regulatory protein TetR; KEGG: cce:Ccel_2357 transcriptional regulator, TetR family. (192 aa)    
Predicted Functional Partners:
Cpap_1122
PFAM: regulatory protein TetR; KEGG: bpo:BP951000_1357 regulatory protein, TetR family.
  
     0.573
Cpap_4089
KEGG: cce:Ccel_2356 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
   0.553
Cpap_4090
KEGG: cce:Ccel_2355 protein of unknown function DUF214.
  
  
 0.532
Cpap_4091
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_2355 protein of unknown function DUF214.
  
  
 0.514
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
    
 0.448
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.407
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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