STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4097KEGG: cce:Ccel_2341 hypothetical protein. (92 aa)    
Predicted Functional Partners:
Cpap_4098
KEGG: cce:Ccel_2340 hypothetical protein.
  
    0.743
Cpap_2652
KEGG: cce:Ccel_2544 flavodoxin/nitric oxide synthase.
  
   0.715
Cpap_1462
KEGG: bld:BLi01542 hypothetical protein.
  
     0.653
Cpap_3287
PFAM: Collagen triple helix repeat-containing protein; KEGG: dhd:Dhaf_0586 collagen triple helix repeat protein.
  
     0.612
Cpap_4142
PFAM: transposase IS605 OrfB; KEGG: cce:Ccel_2298 transposase IS605 OrfB.
  
   
 0.600
Cpap_3586
KEGG: cce:Ccel_1396 hypothetical protein.
  
     0.532
Cpap_3582
PFAM: S-layer domain-containing protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
  
    0.515
Cpap_3184
KEGG: cce:Ccel_1716 hypothetical protein.
  
     0.510
Cpap_4095
PFAM: beta-lactamase; KEGG: cce:Ccel_2343 beta-lactamase.
       0.505
Cpap_4096
KEGG: cce:Ccel_2342 ABC transporter related; manually curated; PFAM: ABC transporter related.
       0.505
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.