STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4104TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; KEGG: cce:Ccel_2333 cyclic peptide transporter; SMART: AAA ATPase. (650 aa)    
Predicted Functional Partners:
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
 
  
 0.951
Cpap_4108
KEGG: cce:Ccel_2329 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NLI interacting domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.913
Cpap_4113
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_2326 phosphopantetheine-binding.
 
    0.879
Cpap_4107
PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding; Acyl transferase; KEGG: cce:Ccel_2330 beta-ketoacyl synthase.
 
   
 0.878
Cpap_4110
Amino acid adenylation domain protein; KEGG: cby:CLM_0375 bacitracin synthetase 1; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 
     0.846
Cpap_3242
KEGG: cby:CLM_0374 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.774
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
 
  
 0.750
Cpap_2684
Amino acid adenylation domain protein; KEGG: bbe:BBR47_28920 linear pentadecapeptide gramicidin synthetase LgrA; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
 
    0.748
Cpap_2682
KEGG: ckr:CKR_1607 hypothetical protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
  
     0.743
Cpap_4105
KEGG: cce:Ccel_2332 hypothetical protein.
       0.741
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.