STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4133PFAM: protein of unknown function DUF45; KEGG: cce:Ccel_2307 protein of unknown function DUF45. (248 aa)    
Predicted Functional Partners:
Cpap_3987
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.674
Cpap_3982
TIGRFAM: type I restriction-modification system, M subunit; KEGG: cpf:CPF_2599 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
 
     0.640
Cpap_3984
PFAM: restriction modification system DNA specificity domain; KEGG: sbm:Shew185_2194 restriction modification system DNA specificity subunit.
 
     0.636
Cpap_4132
PFAM: protein of unknown function DUF1113; KEGG: cce:Ccel_2308 protein of unknown function DUF1113.
       0.501
Cpap_4134
PFAM: aldo/keto reductase; KEGG: cce:Ccel_2306 aldo/keto reductase.
  
    0.481
Cpap_2286
PFAM: N-6 DNA methylase; KEGG: mfe:Mefer_0543 N-6 DNA methylase.
 
     0.456
Cpap_0265
PFAM: Heavy metal transport/detoxification protein; KEGG: cce:Ccel_0745 heavy metal transport/detoxification protein.
 
     0.449
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.