STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4161KEGG: cce:Ccel_2282 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein. (147 aa)    
Predicted Functional Partners:
Cpap_4162
KEGG: cce:Ccel_2281 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.987
Cpap_4163
KEGG: cce:Ccel_2280 stage V sporulation protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
  
 0.962
spoIIAB
Anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
   
 0.896
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.881
Cpap_4159
RNA polymerase, sigma 28 subunit, SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.877
Cpap_4157
KEGG: cce:Ccel_2286 anti-sigma-factor antagonist; TIGRFAM: anti-sigma F factor antagonist; anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
 
   
 0.865
Cpap_0109
KEGG: cth:Cthe_1021 stage IV sporulation protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
   
 0.800
Cpap_0710
KEGG: cth:Cthe_1021 stage IV sporulation protein A; manually curated; PFAM: Sporulation stage IV protein A.
  
   
 0.800
Cpap_2529
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cbt:CLH_0496 sporulation transcriptional regulator spoiiid.
  
   
 0.793
Cpap_1964
KEGG: cce:Ccel_0292 stage II sporulation protein R; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R.
  
   
 0.781
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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