STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4164PFAM: CheC domain protein; KEGG: cce:Ccel_2279 CheC domain protein. (154 aa)    
Predicted Functional Partners:
Cpap_0427
PFAM: PglZ domain protein; KEGG: tpd:Teth39_0929 alkaline phosphatase domain-containing protein.
   
 0.960
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
 
 
 0.864
Cpap_4124
KEGG: cce:Ccel_2316 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
  
 
 0.845
Cpap_0625
KEGG: cce:Ccel_2037 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.819
Cpap_2109
PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_0028 protein of unknown function DUF342.
  
     0.743
Cpap_0608
PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_2021 protein of unknown function DUF342.
  
     0.739
Cpap_4165
RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.662
Cpap_3224
PFAM: Protein of unknown function DUF2225; KEGG: cce:Ccel_1682 hypothetical protein.
 
     0.660
Cpap_1607
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: cce:Ccel_0626 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
    
  0.553
Cpap_0614
KEGG: cce:Ccel_2027 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein.
   
 0.503
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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