STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4180KEGG: cce:Ccel_2264 hypothetical protein. (625 aa)    
Predicted Functional Partners:
Cpap_4179
TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; KEGG: cce:Ccel_2265 ABC-type bacteriocin transporter; SMART: AAA ATPase.
 
 0.991
Cpap_2357
Hypothetical protein; KEGG: cce:Ccel_3396 outer membrane protein-like protein.
  
 0.860
Cpap_2358
PFAM: outer membrane efflux protein; KEGG: cce:Ccel_3395 hypothetical protein.
  
 0.860
Cpap_2012
KEGG: cce:Ccel_0343 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
 0.805
Cpap_3422
KEGG: dhd:Dhaf_3722 ABC transporter related; PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase.
  
 
 0.717
Cpap_4181
KEGG: cce:Ccel_2263 hypothetical protein.
       0.642
hisI
phosphoribosyl-ATP diphosphatase; KEGG: cce:Ccel_0389 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; In the N-terminal section; belongs to the PRA-CH family.
  
    0.580
Cpap_1823
KEGG: cpy:Cphy_3579 hypothetical protein.
 
 
 0.536
Cpap_3912
KEGG: cce:Ccel_1144 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; DsrE family protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
  
    0.522
Cpap_0499
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0558 protein of unknown function DUF214.
  
  
 0.470
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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