STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4187Hypothetical protein; KEGG: phe:Phep_0480 amidohydrolase 3. (161 aa)    
Predicted Functional Partners:
Cpap_4186
PFAM: protein of unknown function DUF214; KEGG: ccu:Ccur_03350 predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
       0.556
Cpap_4185
PFAM: protein of unknown function DUF214; KEGG: cbe:Cbei_3685 hypothetical protein.
       0.532
Cpap_4183
KEGG: cce:Ccel_2261 hypothetical protein.
       0.522
Cpap_4184
KEGG: pth:PTH_0038 peptide ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.522
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.