STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4201KEGG: cce:Ccel_2248 hypothetical protein. (490 aa)    
Predicted Functional Partners:
Cpap_4200
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_2249 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
 
     0.932
Cpap_4199
KEGG: cce:Ccel_2250 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 
     0.820
Cpap_4198
PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_2251 polysaccharide deacetylase.
       0.723
Cpap_3917
Helix-turn-helix domain protein; KEGG: cce:Ccel_1150 XRE family plasmid maintenance system antidote protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.711
Cpap_2040
PFAM: sulfatase; KEGG: cce:Ccel_0371 sulfatase.
  
    0.603
Cpap_3540
PFAM: protein of unknown function DUF107; KEGG: cce:Ccel_1381 hypothetical protein.
  
     0.574
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.553
Cpap_4203
PFAM: protein of unknown function DUF523; KEGG: cce:Ccel_2246 protein of unknown function DUF523.
       0.553
Cpap_2833
KEGG: drm:Dred_2640 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
 
     0.497
Cpap_4197
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_2252 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
       0.474
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.