STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4230KEGG: eel:EUBELI_00880 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase. (252 aa)    
Predicted Functional Partners:
Cpap_4229
PFAM: protein of unknown function DUF214; KEGG: cdl:CDR20291_2757 hypothetical protein.
 
 0.976
Cpap_1310
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1525 hypothetical protein.
 
 0.970
Cpap_4231
Integral membrane sensor signal transduction histidine kinase; KEGG: cdl:CDR20291_2760 two-component system, sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
   
 0.885
Cpap_3856
PFAM: protein of unknown function DUF214; KEGG: eel:EUBELI_20665 hypothetical protein.
 
 0.878
Cpap_3581
PFAM: protein of unknown function DUF214; KEGG: ate:Athe_2296 protein of unknown function DUF214.
 
  0.874
Cpap_1064
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214.
 
  0.841
Cpap_4232
Two component transcriptional regulator, winged helix family; KEGG: cpf:CPF_0836 DNA-binding response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
 
     0.715
Cpap_1308
Integral membrane sensor signal transduction histidine kinase; KEGG: clj:CLJU_c14400 putative two component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
   
 0.705
Cpap_3921
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_1152 protein of unknown function DUF214.
  
  0.584
Cpap_1882
KEGG: cce:Ccel_0227 hypothetical protein.
   
 
 0.582
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.