STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_4231Integral membrane sensor signal transduction histidine kinase; KEGG: cdl:CDR20291_2760 two-component system, sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (337 aa)    
Predicted Functional Partners:
Cpap_4232
Two component transcriptional regulator, winged helix family; KEGG: cpf:CPF_0836 DNA-binding response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
 0.986
Cpap_1307
Two component transcriptional regulator, winged helix family; KEGG: clj:CLJU_c14390 two-component response regulator; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 0.946
Cpap_4229
PFAM: protein of unknown function DUF214; KEGG: cdl:CDR20291_2757 hypothetical protein.
 
   
 0.909
Cpap_4230
KEGG: eel:EUBELI_00880 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
   
 0.885
Cpap_1310
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1525 hypothetical protein.
 
 
 0.872
Cpap_2609
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_2505 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region.
  
 0.789
Cpap_1406
Transketolase central region; KEGG: cce:Ccel_3449 transketolase domain protein; PFAM: Transketolase central region; Transketolase domain-containing protein; SMART: Transketolase central region.
    
 0.784
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 0.779
Cpap_0666
KEGG: cth:Cthe_0891 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 0.725
Cpap_1140
Two component transcriptional regulator, winged helix family; KEGG: ctc:CTC01421 transcriptional regulatory component of sensory transduction system; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 0.703
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.