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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ86549.1Aldose 1-epimerase. (331 aa)    
Predicted Functional Partners:
SFI87180.1
Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.903
SFJ86574.1
2-dehydro-3-deoxygalactonokinase.
 
     0.871
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.718
SFI88025.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
  
 0.681
SFI88280.1
Beta-mannosidase.
 
 
 0.651
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
   
 0.635
SFI89581.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.629
SFI79500.1
Predicted dehydrogenase.
 
 
 0.615
xylB
Xylulokinase.
 
  
 0.612
SFJ23232.1
Predicted dehydrogenase.
 
 
 0.612
Your Current Organism:
Celeribacter neptunius
NCBI taxonomy Id: 588602
Other names: C. neptunius, CIP 109922, Celeribacter neptunius Ivanova et al. 2010, DSM 26471, KMM 6012, alpha proteobacterium H 14, strain H 14
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