A0BIB6_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0BIB6_PARTE

ULP_PROTEASE domain-containing protein. (208 aa)

Predicted Functional Partners:

A0CV24_PARTE

0.969

A0D8I7_PARTE

0.969

A0DN34_PARTE

0.969

A0EIJ2_PARTE

0.969

A0EIJ3_PARTE

0.969

A0DLZ0_PARTE

0.966

A0DNY6_PARTE

0.959

A0BYQ7_PARTE

0.885

A0BIE9_PARTE

0.841

A0BYM0_PARTE

0.841

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BIB6_PARTE	A0BIE9_PARTE	A0BIB6	A0BIE9	ULP_PROTEASE domain-containing protein.	Ubiquitin-like domain-containing protein.	0.841
A0BIB6_PARTE	A0BYM0_PARTE	A0BIB6	A0BYM0	ULP_PROTEASE domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.841
A0BIB6_PARTE	A0BYQ7_PARTE	A0BIB6	A0BYQ7	ULP_PROTEASE domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.885
A0BIB6_PARTE	A0CV24_PARTE	A0BIB6	A0CV24	ULP_PROTEASE domain-containing protein.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.969
A0BIB6_PARTE	A0D8I7_PARTE	A0BIB6	A0D8I7	ULP_PROTEASE domain-containing protein.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.969
A0BIB6_PARTE	A0DLZ0_PARTE	A0BIB6	A0DLZ0	ULP_PROTEASE domain-containing protein.	ThiF domain-containing protein.	0.966
A0BIB6_PARTE	A0DN34_PARTE	A0BIB6	A0DN34	ULP_PROTEASE domain-containing protein.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.969
A0BIB6_PARTE	A0DNY6_PARTE	A0BIB6	A0DNY6	ULP_PROTEASE domain-containing protein.	NEDD8-activating enzyme E1 regulatory subunit.	0.959
A0BIB6_PARTE	A0EIJ2_PARTE	A0BIB6	A0EIJ2	ULP_PROTEASE domain-containing protein.	Uncharacterized protein.	0.969
A0BIB6_PARTE	A0EIJ3_PARTE	A0BIB6	A0EIJ3	ULP_PROTEASE domain-containing protein.	Aconitase domain-containing protein.	0.969
A0BIE9_PARTE	A0BIB6_PARTE	A0BIE9	A0BIB6	Ubiquitin-like domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.841
A0BIE9_PARTE	A0BYQ7_PARTE	A0BIE9	A0BYQ7	Ubiquitin-like domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.962
A0BIE9_PARTE	A0CV24_PARTE	A0BIE9	A0CV24	Ubiquitin-like domain-containing protein.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.553
A0BIE9_PARTE	A0D8I7_PARTE	A0BIE9	A0D8I7	Ubiquitin-like domain-containing protein.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.553
A0BIE9_PARTE	A0DLZ0_PARTE	A0BIE9	A0DLZ0	Ubiquitin-like domain-containing protein.	ThiF domain-containing protein.	0.780
A0BIE9_PARTE	A0DN34_PARTE	A0BIE9	A0DN34	Ubiquitin-like domain-containing protein.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.553
A0BIE9_PARTE	A0DNY6_PARTE	A0BIE9	A0DNY6	Ubiquitin-like domain-containing protein.	NEDD8-activating enzyme E1 regulatory subunit.	0.591
A0BIE9_PARTE	A0EIJ2_PARTE	A0BIE9	A0EIJ2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.553
A0BIE9_PARTE	A0EIJ3_PARTE	A0BIE9	A0EIJ3	Ubiquitin-like domain-containing protein.	Aconitase domain-containing protein.	0.553
A0BYM0_PARTE	A0BIB6_PARTE	A0BYM0	A0BIB6	Ribosomal_S27 domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.841