A0C827_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0C827_PARTE

Uncharacterized protein. (520 aa)

Predicted Functional Partners:

A0BKZ0_PARTE

0.980

A0CI47_PARTE

0.973

A0BLN4_PARTE

0.935

A0BRF4_PARTE

0.935

A0BJU5_PARTE

0.933

A0C6P3_PARTE

0.933

A0BGK9_PARTE

0.931

A0BH17_PARTE

0.931

A0C7H4_PARTE

0.931

A0CT70_PARTE

0.920

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BGK9_PARTE	A0BH17_PARTE	A0BGK9	A0BH17	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.900
A0BGK9_PARTE	A0BJU5_PARTE	A0BGK9	A0BJU5	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.990
A0BGK9_PARTE	A0BKZ0_PARTE	A0BGK9	A0BKZ0	TPR_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
A0BGK9_PARTE	A0BLN4_PARTE	A0BGK9	A0BLN4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.991
A0BGK9_PARTE	A0BRF4_PARTE	A0BGK9	A0BRF4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.991
A0BGK9_PARTE	A0C6P3_PARTE	A0BGK9	A0C6P3	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.990
A0BGK9_PARTE	A0C7H4_PARTE	A0BGK9	A0C7H4	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.900
A0BGK9_PARTE	A0C827_PARTE	A0BGK9	A0C827	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.931
A0BGK9_PARTE	A0CI47_PARTE	A0BGK9	A0CI47	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0BGK9_PARTE	A0CT70_PARTE	A0BGK9	A0CT70	TPR_REGION domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.989
A0BH17_PARTE	A0BGK9_PARTE	A0BH17	A0BGK9	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.900
A0BH17_PARTE	A0BJU5_PARTE	A0BH17	A0BJU5	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.990
A0BH17_PARTE	A0BKZ0_PARTE	A0BH17	A0BKZ0	TPR_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
A0BH17_PARTE	A0BLN4_PARTE	A0BH17	A0BLN4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.991
A0BH17_PARTE	A0BRF4_PARTE	A0BH17	A0BRF4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.991
A0BH17_PARTE	A0C6P3_PARTE	A0BH17	A0C6P3	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.990
A0BH17_PARTE	A0C7H4_PARTE	A0BH17	A0C7H4	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.900
A0BH17_PARTE	A0C827_PARTE	A0BH17	A0C827	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.931
A0BH17_PARTE	A0CI47_PARTE	A0BH17	A0CI47	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0BH17_PARTE	A0CT70_PARTE	A0BH17	A0CT70	TPR_REGION domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.989