A0CQS8_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0CQS8_PARTE

Uncharacterized protein. (224 aa)

Predicted Functional Partners:

A0BNS6_PARTE

0.922

A0CA16_PARTE

0.922

A0DL23_PARTE

0.922

A0D6G5_PARTE

0.913

A0E096_PARTE

0.913

A0E3R2_PARTE

0.899

A0EDY0_PARTE

0.899

A0CIC8_PARTE

0.846

A0BQV8_PARTE

0.812

A0D409_PARTE

0.812

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BNS6_PARTE	A0BQV8_PARTE	A0BNS6	A0BQV8	WD_REPEATS_REGION domain-containing protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.789
A0BNS6_PARTE	A0CIC8_PARTE	A0BNS6	A0CIC8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.448
A0BNS6_PARTE	A0CQS8_PARTE	A0BNS6	A0CQS8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.922
A0BNS6_PARTE	A0D409_PARTE	A0BNS6	A0D409	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.789
A0BNS6_PARTE	A0E3R2_PARTE	A0BNS6	A0E3R2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.564
A0BNS6_PARTE	A0EDY0_PARTE	A0BNS6	A0EDY0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.564
A0BQV8_PARTE	A0BNS6_PARTE	A0BQV8	A0BNS6	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	WD_REPEATS_REGION domain-containing protein.	0.789
A0BQV8_PARTE	A0CA16_PARTE	A0BQV8	A0CA16	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.789
A0BQV8_PARTE	A0CQS8_PARTE	A0BQV8	A0CQS8	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	Uncharacterized protein.	0.812
A0BQV8_PARTE	A0DL23_PARTE	A0BQV8	A0DL23	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.789
A0CA16_PARTE	A0BQV8_PARTE	A0CA16	A0BQV8	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.789
A0CA16_PARTE	A0CIC8_PARTE	A0CA16	A0CIC8	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.448
A0CA16_PARTE	A0CQS8_PARTE	A0CA16	A0CQS8	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.922
A0CA16_PARTE	A0D409_PARTE	A0CA16	A0D409	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.789
A0CA16_PARTE	A0DL23_PARTE	A0CA16	A0DL23	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.540
A0CA16_PARTE	A0E3R2_PARTE	A0CA16	A0E3R2	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	WD_REPEATS_REGION domain-containing protein.	0.564
A0CA16_PARTE	A0EDY0_PARTE	A0CA16	A0EDY0	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	WD_REPEATS_REGION domain-containing protein.	0.564
A0CIC8_PARTE	A0BNS6_PARTE	A0CIC8	A0BNS6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.448
A0CIC8_PARTE	A0CA16_PARTE	A0CIC8	A0CA16	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.448
A0CIC8_PARTE	A0CQS8_PARTE	A0CIC8	A0CQS8	Uncharacterized protein.	Uncharacterized protein.	0.846