A0CR50_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0CR50_PARTE

Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (129 aa)

Predicted Functional Partners:

A0BQ78_PARTE

0.729

A0CP26_PARTE

0.729

A0EBA6_PARTE

0.729

A0DV33_PARTE

0.689

A0EI36_PARTE

0.689

A0DLY4_PARTE

0.599

A0C080_PARTE

0.466

A0D9L6_PARTE

0.466

A0CKR3_PARTE

0.463

A0CXL9_PARTE

0.462

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BQ78_PARTE	A0C080_PARTE	A0BQ78	A0C080	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.735
A0BQ78_PARTE	A0CKR3_PARTE	A0BQ78	A0CKR3	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.717
A0BQ78_PARTE	A0CP26_PARTE	A0BQ78	A0CP26	Uncharacterized protein.	Uncharacterized protein.	0.543
A0BQ78_PARTE	A0CR50_PARTE	A0BQ78	A0CR50	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.729
A0BQ78_PARTE	A0CXL9_PARTE	A0BQ78	A0CXL9	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.840
A0BQ78_PARTE	A0D9L6_PARTE	A0BQ78	A0D9L6	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.735
A0BQ78_PARTE	A0DLY4_PARTE	A0BQ78	A0DLY4	Uncharacterized protein.	Uncharacterized protein.	0.787
A0BQ78_PARTE	A0EBA6_PARTE	A0BQ78	A0EBA6	Uncharacterized protein.	Uncharacterized protein.	0.543
A0C080_PARTE	A0BQ78_PARTE	A0C080	A0BQ78	IFT81_CH domain-containing protein.	Uncharacterized protein.	0.735
A0C080_PARTE	A0CP26_PARTE	A0C080	A0CP26	IFT81_CH domain-containing protein.	Uncharacterized protein.	0.735
A0C080_PARTE	A0CR50_PARTE	A0C080	A0CR50	IFT81_CH domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.466
A0C080_PARTE	A0D9L6_PARTE	A0C080	A0D9L6	IFT81_CH domain-containing protein.	IFT81_CH domain-containing protein.	0.543
A0C080_PARTE	A0DLY4_PARTE	A0C080	A0DLY4	IFT81_CH domain-containing protein.	Uncharacterized protein.	0.997
A0C080_PARTE	A0EBA6_PARTE	A0C080	A0EBA6	IFT81_CH domain-containing protein.	Uncharacterized protein.	0.735
A0CKR3_PARTE	A0BQ78_PARTE	A0CKR3	A0BQ78	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.717
A0CKR3_PARTE	A0CP26_PARTE	A0CKR3	A0CP26	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.717
A0CKR3_PARTE	A0CR50_PARTE	A0CKR3	A0CR50	CAP-Gly domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.463
A0CKR3_PARTE	A0CXL9_PARTE	A0CKR3	A0CXL9	CAP-Gly domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.871
A0CKR3_PARTE	A0EBA6_PARTE	A0CKR3	A0EBA6	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.717
A0CP26_PARTE	A0BQ78_PARTE	A0CP26	A0BQ78	Uncharacterized protein.	Uncharacterized protein.	0.543