A0CYD8_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0CYD8_PARTE

Uncharacterized protein. (250 aa)

Predicted Functional Partners:

A0CDB7_PARTE

0.921

A0DK60_PARTE

0.921

A0E0P2_PARTE

0.921

CFAP20

0.722

A0BGD2_PARTE

0.669

A0BD93_PARTE

0.609

A0BIJ6_PARTE

0.609

A0CF14_PARTE

0.609

A0CF15_PARTE

0.609

A0DFZ4_PARTE

0.609

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BD93_PARTE	A0BGD2_PARTE	A0BD93	A0BGD2	Uncharacterized protein.	Uncharacterized protein.	0.889
A0BD93_PARTE	A0BIJ6_PARTE	A0BD93	A0BIJ6	Uncharacterized protein.	Uncharacterized protein.	0.762
A0BD93_PARTE	A0CDB7_PARTE	A0BD93	A0CDB7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.978
A0BD93_PARTE	A0CYD8_PARTE	A0BD93	A0CYD8	Uncharacterized protein.	Uncharacterized protein.	0.609
A0BD93_PARTE	A0DK60_PARTE	A0BD93	A0DK60	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.982
A0BD93_PARTE	A0E0P2_PARTE	A0BD93	A0E0P2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.982
A0BD93_PARTE	CFAP20	A0BD93	A0CDD4	Uncharacterized protein.	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein required for axonemal structure organization and motility. May also play a role in cortical organization of basal body; Belongs to the CFAP20 family.	0.637
A0BGD2_PARTE	A0BD93_PARTE	A0BGD2	A0BD93	Uncharacterized protein.	Uncharacterized protein.	0.889
A0BGD2_PARTE	A0BIJ6_PARTE	A0BGD2	A0BIJ6	Uncharacterized protein.	Uncharacterized protein.	0.763
A0BGD2_PARTE	A0CDB7_PARTE	A0BGD2	A0CDB7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
A0BGD2_PARTE	A0CF14_PARTE	A0BGD2	A0CF14	Uncharacterized protein.	Uncharacterized protein.	0.889
A0BGD2_PARTE	A0CF15_PARTE	A0BGD2	A0CF15	Uncharacterized protein.	Uncharacterized protein.	0.889
A0BGD2_PARTE	A0CYD8_PARTE	A0BGD2	A0CYD8	Uncharacterized protein.	Uncharacterized protein.	0.669
A0BGD2_PARTE	A0DFZ4_PARTE	A0BGD2	A0DFZ4	Uncharacterized protein.	Uncharacterized protein.	0.889
A0BGD2_PARTE	A0DK60_PARTE	A0BGD2	A0DK60	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
A0BGD2_PARTE	A0E0P2_PARTE	A0BGD2	A0E0P2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
A0BGD2_PARTE	CFAP20	A0BGD2	A0CDD4	Uncharacterized protein.	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein required for axonemal structure organization and motility. May also play a role in cortical organization of basal body; Belongs to the CFAP20 family.	0.814
A0BIJ6_PARTE	A0BD93_PARTE	A0BIJ6	A0BD93	Uncharacterized protein.	Uncharacterized protein.	0.762
A0BIJ6_PARTE	A0BGD2_PARTE	A0BIJ6	A0BGD2	Uncharacterized protein.	Uncharacterized protein.	0.763
A0BIJ6_PARTE	A0CDB7_PARTE	A0BIJ6	A0CDB7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.968