A0D463_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0D463_PARTE

CRAL-TRIO domain-containing protein. (437 aa)

Predicted Functional Partners:

A0CHK3_PARTE

0.564

A0CY10_PARTE

0.564

A0BHR7_PARTE

0.533

A0C6D5_PARTE

0.533

A0DLL2_PARTE

0.533

A0BKM3_PARTE

0.526

A0E2R6_PARTE

0.526

A0EEX5_PARTE

0.526

A0BKX3_PARTE

0.495

A0BM57_PARTE

0.495

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BHR7_PARTE	A0D463_PARTE	A0BHR7	A0D463	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.533
A0BKM3_PARTE	A0CHK3_PARTE	A0BKM3	A0CHK3	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.974
A0BKM3_PARTE	A0CY10_PARTE	A0BKM3	A0CY10	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.974
A0BKM3_PARTE	A0D463_PARTE	A0BKM3	A0D463	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	CRAL-TRIO domain-containing protein.	0.526
A0BKM3_PARTE	A0E2R6_PARTE	A0BKM3	A0E2R6	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP4E_app_platf domain-containing protein.	0.543
A0BKM3_PARTE	A0EEX5_PARTE	A0BKM3	A0EEX5	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP-1 complex subunit gamma.	0.540
A0BKX3_PARTE	A0D463_PARTE	A0BKX3	A0D463	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	CRAL-TRIO domain-containing protein.	0.495
A0BM57_PARTE	A0D463_PARTE	A0BM57	A0D463	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	CRAL-TRIO domain-containing protein.	0.495
A0C6D5_PARTE	A0D463_PARTE	A0C6D5	A0D463	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.533
A0CHK3_PARTE	A0BKM3_PARTE	A0CHK3	A0BKM3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.974
A0CHK3_PARTE	A0CY10_PARTE	A0CHK3	A0CY10	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.900
A0CHK3_PARTE	A0D463_PARTE	A0CHK3	A0D463	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	CRAL-TRIO domain-containing protein.	0.564
A0CHK3_PARTE	A0E2R6_PARTE	A0CHK3	A0E2R6	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP4E_app_platf domain-containing protein.	0.962
A0CHK3_PARTE	A0EEX5_PARTE	A0CHK3	A0EEX5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma.	0.981
A0CY10_PARTE	A0BKM3_PARTE	A0CY10	A0BKM3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.974
A0CY10_PARTE	A0CHK3_PARTE	A0CY10	A0CHK3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.900
A0CY10_PARTE	A0D463_PARTE	A0CY10	A0D463	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	CRAL-TRIO domain-containing protein.	0.564
A0CY10_PARTE	A0E2R6_PARTE	A0CY10	A0E2R6	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP4E_app_platf domain-containing protein.	0.962
A0CY10_PARTE	A0EEX5_PARTE	A0CY10	A0EEX5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma.	0.981
A0D463_PARTE	A0BHR7_PARTE	A0D463	A0BHR7	CRAL-TRIO domain-containing protein.	Uncharacterized protein.	0.533