STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0D9C5_PARTERBR-type E3 ubiquitin transferase. (476 aa)    
Predicted Functional Partners:
A0BJ41_PARTE
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.824
A0BUT4_PARTE
Ubiquitin-like domain-containing protein.
    
  0.721
A0C9Z8_PARTE
Ubiquitin-like domain-containing protein.
    
  0.721
A0CDV3_PARTE
RBR-type E3 ubiquitin transferase.
  
 
 0.633
A0E469_PARTE
RBR-type E3 ubiquitin transferase.
  
 
 0.633
A0BIE9_PARTE
Ubiquitin-like domain-containing protein.
    
 0.606
A0BYM0_PARTE
Ribosomal_S27 domain-containing protein.
    
 0.606
A0C4L4_PARTE
Ribosomal_S27 domain-containing protein.
    
 0.606
A0CT93_PARTE
Ribosomal_S27 domain-containing protein.
    
 0.606
A0CXA3_PARTE
Ribosomal_S27 domain-containing protein.
    
 0.606
Your Current Organism:
Paramecium tetraurelia
NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.