A0D9H5_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0D9H5_PARTE

Uncharacterized protein. (286 aa)

Predicted Functional Partners:

A0BCY8_PARTE

0.909

A0C1R4_PARTE

0.909

A0CBK7_PARTE

0.909

A0BKX0_PARTE

0.850

A0BM58_PARTE

0.850

A0C1F8_PARTE

0.838

A0CCB3_PARTE

0.838

A0BC54_PARTE

0.837

PTMB.06c

0.837

A0D0B8_PARTE

0.820

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BC54_PARTE	A0BCY8_PARTE	A0BC54	A0BCY8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.876
A0BC54_PARTE	A0BKX0_PARTE	A0BC54	A0BKX0	Uncharacterized protein.	Brix domain-containing protein.	0.994
A0BC54_PARTE	A0BM58_PARTE	A0BC54	A0BM58	Uncharacterized protein.	Brix domain-containing protein.	0.994
A0BC54_PARTE	A0C1F8_PARTE	A0BC54	A0C1F8	Uncharacterized protein.	RRM domain-containing protein.	0.997
A0BC54_PARTE	A0C1R4_PARTE	A0BC54	A0C1R4	Uncharacterized protein.	Rhomboid domain-containing protein.	0.876
A0BC54_PARTE	A0CBK7_PARTE	A0BC54	A0CBK7	Uncharacterized protein.	Rhomboid domain-containing protein.	0.876
A0BC54_PARTE	A0CCB3_PARTE	A0BC54	A0CCB3	Uncharacterized protein.	RRM domain-containing protein.	0.997
A0BC54_PARTE	A0D0B8_PARTE	A0BC54	A0D0B8	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.996
A0BC54_PARTE	A0D9H5_PARTE	A0BC54	A0D9H5	Uncharacterized protein.	Uncharacterized protein.	0.837
A0BC54_PARTE	PTMB.06c	A0BC54	Q6BGL7	Uncharacterized protein.	Uncharacterized protein.	0.540
A0BCY8_PARTE	A0BC54_PARTE	A0BCY8	A0BC54	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.876
A0BCY8_PARTE	A0BKX0_PARTE	A0BCY8	A0BKX0	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Brix domain-containing protein.	0.631
A0BCY8_PARTE	A0BM58_PARTE	A0BCY8	A0BM58	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Brix domain-containing protein.	0.631
A0BCY8_PARTE	A0C1F8_PARTE	A0BCY8	A0C1F8	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	RRM domain-containing protein.	0.903
A0BCY8_PARTE	A0CCB3_PARTE	A0BCY8	A0CCB3	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	RRM domain-containing protein.	0.903
A0BCY8_PARTE	A0D0B8_PARTE	A0BCY8	A0D0B8	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.985
A0BCY8_PARTE	A0D9H5_PARTE	A0BCY8	A0D9H5	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.909
A0BCY8_PARTE	PTMB.06c	A0BCY8	Q6BGL7	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.876
A0BKX0_PARTE	A0BC54_PARTE	A0BKX0	A0BC54	Brix domain-containing protein.	Uncharacterized protein.	0.994
A0BKX0_PARTE	A0BCY8_PARTE	A0BKX0	A0BCY8	Brix domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.631