A0DFP2_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0DFP2_PARTE

CKK domain-containing protein. (768 aa)

Predicted Functional Partners:

A0DIM5_PARTE

0.876

A0DRT5_PARTE

0.876

KATNAL2

0.607

KATNAL2-2

0.607

A0C581_PARTE

0.572

A0CRL7_PARTE

0.572

A0DYE4_PARTE

0.569

A0BEE3_PARTE

0.443

A0BGV0_PARTE

0.443

A0BN60_PARTE

0.443

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BEE3_PARTE	A0DFP2_PARTE	A0BEE3	A0DFP2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CKK domain-containing protein.	0.443
A0BEE3_PARTE	KATNAL2	A0BEE3	A0D0B7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.410
A0BEE3_PARTE	KATNAL2-2	A0BEE3	A0DC17	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.410
A0BGV0_PARTE	A0DFP2_PARTE	A0BGV0	A0DFP2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CKK domain-containing protein.	0.443
A0BGV0_PARTE	KATNAL2	A0BGV0	A0D0B7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.410
A0BGV0_PARTE	KATNAL2-2	A0BGV0	A0DC17	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.410
A0BN60_PARTE	A0DFP2_PARTE	A0BN60	A0DFP2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CKK domain-containing protein.	0.443
A0BN60_PARTE	KATNAL2	A0BN60	A0D0B7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.410
A0BN60_PARTE	KATNAL2-2	A0BN60	A0DC17	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.410
A0C581_PARTE	A0CRL7_PARTE	A0C581	A0CRL7	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.900
A0C581_PARTE	A0DFP2_PARTE	A0C581	A0DFP2	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	CKK domain-containing protein.	0.572
A0C581_PARTE	KATNAL2	A0C581	A0D0B7	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.529
A0C581_PARTE	KATNAL2-2	A0C581	A0DC17	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.529
A0CRL7_PARTE	A0C581_PARTE	A0CRL7	A0C581	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.900
A0CRL7_PARTE	A0DFP2_PARTE	A0CRL7	A0DFP2	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	CKK domain-containing protein.	0.572
A0CRL7_PARTE	KATNAL2	A0CRL7	A0D0B7	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.529
A0CRL7_PARTE	KATNAL2-2	A0CRL7	A0DC17	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.529
A0DFP2_PARTE	A0BEE3_PARTE	A0DFP2	A0BEE3	CKK domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.443
A0DFP2_PARTE	A0BGV0_PARTE	A0DFP2	A0BGV0	CKK domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.443
A0DFP2_PARTE	A0BN60_PARTE	A0DFP2	A0BN60	CKK domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.443