A0DT96_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0DT96_PARTE

Uncharacterized protein. (240 aa)

Predicted Functional Partners:

A0BEU2_PARTE

0.979

A0D6G2_PARTE

0.979

A0D827_PARTE

0.979

A0BHI3_PARTE

0.968

A0DJF9_PARTE

0.956

A0BI02_PARTE

0.954

A0BQE3_PARTE

0.954

A0CQS9_PARTE

0.901

A0D6Y0_PARTE

0.900

A0C1L1_PARTE

0.809

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BEU2_PARTE	A0BHI3_PARTE	A0BEU2	A0BHI3	Uncharacterized protein.	Uncharacterized protein.	0.994
A0BEU2_PARTE	A0BI02_PARTE	A0BEU2	A0BI02	Uncharacterized protein.	PIG-P domain-containing protein; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	0.987
A0BEU2_PARTE	A0BQE3_PARTE	A0BEU2	A0BQE3	Uncharacterized protein.	PIG-P domain-containing protein; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	0.987
A0BEU2_PARTE	A0CQS9_PARTE	A0BEU2	A0CQS9	Uncharacterized protein.	Uncharacterized protein.	0.979
A0BEU2_PARTE	A0D6G2_PARTE	A0BEU2	A0D6G2	Uncharacterized protein.	Uncharacterized protein.	0.901
A0BEU2_PARTE	A0D6Y0_PARTE	A0BEU2	A0D6Y0	Uncharacterized protein.	Dolichol phosphate-mannose biosynthesis regulatory protein; Regulatory subunit of the dolichol-phosphate mannose (DPM) synthase complex; essential for the ER localization. Belongs to the DPM2 family.	0.900
A0BEU2_PARTE	A0D827_PARTE	A0BEU2	A0D827	Uncharacterized protein.	Uncharacterized protein.	0.900
A0BEU2_PARTE	A0DJF9_PARTE	A0BEU2	A0DJF9	Uncharacterized protein.	Uncharacterized protein.	0.992
A0BEU2_PARTE	A0DT96_PARTE	A0BEU2	A0DT96	Uncharacterized protein.	Uncharacterized protein.	0.979
A0BHI3_PARTE	A0BEU2_PARTE	A0BHI3	A0BEU2	Uncharacterized protein.	Uncharacterized protein.	0.994
A0BHI3_PARTE	A0BI02_PARTE	A0BHI3	A0BI02	Uncharacterized protein.	PIG-P domain-containing protein; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	0.993
A0BHI3_PARTE	A0BQE3_PARTE	A0BHI3	A0BQE3	Uncharacterized protein.	PIG-P domain-containing protein; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	0.993
A0BHI3_PARTE	A0CQS9_PARTE	A0BHI3	A0CQS9	Uncharacterized protein.	Uncharacterized protein.	0.968
A0BHI3_PARTE	A0D6G2_PARTE	A0BHI3	A0D6G2	Uncharacterized protein.	Uncharacterized protein.	0.994
A0BHI3_PARTE	A0D6Y0_PARTE	A0BHI3	A0D6Y0	Uncharacterized protein.	Dolichol phosphate-mannose biosynthesis regulatory protein; Regulatory subunit of the dolichol-phosphate mannose (DPM) synthase complex; essential for the ER localization. Belongs to the DPM2 family.	0.900
A0BHI3_PARTE	A0D827_PARTE	A0BHI3	A0D827	Uncharacterized protein.	Uncharacterized protein.	0.994
A0BHI3_PARTE	A0DJF9_PARTE	A0BHI3	A0DJF9	Uncharacterized protein.	Uncharacterized protein.	0.997
A0BHI3_PARTE	A0DT96_PARTE	A0BHI3	A0DT96	Uncharacterized protein.	Uncharacterized protein.	0.968
A0BI02_PARTE	A0BEU2_PARTE	A0BI02	A0BEU2	PIG-P domain-containing protein; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	Uncharacterized protein.	0.987
A0BI02_PARTE	A0BHI3_PARTE	A0BI02	A0BHI3	PIG-P domain-containing protein; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	Uncharacterized protein.	0.993