A0E0G6_PARTE protein (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0E0G6_PARTE

Uncharacterized protein. (563 aa)

Predicted Functional Partners:

A0BUZ0_PARTE

0.570

A0CLD4_PARTE

0.570

A0CZN4_PARTE

0.570

A0E8C3_PARTE

0.570

A0E3Z6_PARTE

0.560

A0EDR1_PARTE

0.560

A0CFR1_PARTE

0.522

A0E455_PARTE

0.512

A0EDJ6_PARTE

0.512

A0BGD2_PARTE

0.511

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BGD2_PARTE	A0CFR1_PARTE	A0BGD2	A0CFR1	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.549
A0BGD2_PARTE	A0E0G6_PARTE	A0BGD2	A0E0G6	Uncharacterized protein.	Uncharacterized protein.	0.511
A0BUZ0_PARTE	A0E0G6_PARTE	A0BUZ0	A0E0G6	SAS-6_N domain-containing protein.	Uncharacterized protein.	0.570
A0CFR1_PARTE	A0BGD2_PARTE	A0CFR1	A0BGD2	Uncharacterized protein; Belongs to the peptidase M24B family.	Uncharacterized protein.	0.549
A0CFR1_PARTE	A0E0G6_PARTE	A0CFR1	A0E0G6	Uncharacterized protein; Belongs to the peptidase M24B family.	Uncharacterized protein.	0.522
A0CFR1_PARTE	A0E3Z6_PARTE	A0CFR1	A0E3Z6	Uncharacterized protein; Belongs to the peptidase M24B family.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.785
A0CFR1_PARTE	A0EDR1_PARTE	A0CFR1	A0EDR1	Uncharacterized protein; Belongs to the peptidase M24B family.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.785
A0CLD4_PARTE	A0E0G6_PARTE	A0CLD4	A0E0G6	SAS-6_N domain-containing protein.	Uncharacterized protein.	0.570
A0CZN4_PARTE	A0E0G6_PARTE	A0CZN4	A0E0G6	SAS-6_N domain-containing protein.	Uncharacterized protein.	0.570
A0E0G6_PARTE	A0BGD2_PARTE	A0E0G6	A0BGD2	Uncharacterized protein.	Uncharacterized protein.	0.511
A0E0G6_PARTE	A0BUZ0_PARTE	A0E0G6	A0BUZ0	Uncharacterized protein.	SAS-6_N domain-containing protein.	0.570
A0E0G6_PARTE	A0CFR1_PARTE	A0E0G6	A0CFR1	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.522
A0E0G6_PARTE	A0CLD4_PARTE	A0E0G6	A0CLD4	Uncharacterized protein.	SAS-6_N domain-containing protein.	0.570
A0E0G6_PARTE	A0CZN4_PARTE	A0E0G6	A0CZN4	Uncharacterized protein.	SAS-6_N domain-containing protein.	0.570
A0E0G6_PARTE	A0E3Z6_PARTE	A0E0G6	A0E3Z6	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.560
A0E0G6_PARTE	A0E455_PARTE	A0E0G6	A0E455	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.512
A0E0G6_PARTE	A0E8C3_PARTE	A0E0G6	A0E8C3	Uncharacterized protein.	SAS-6_N domain-containing protein.	0.570
A0E0G6_PARTE	A0EDJ6_PARTE	A0E0G6	A0EDJ6	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.512
A0E0G6_PARTE	A0EDR1_PARTE	A0E0G6	A0EDR1	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.560
A0E3Z6_PARTE	A0CFR1_PARTE	A0E3Z6	A0CFR1	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.785