STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0EF43_PARTEWD_REPEATS_REGION domain-containing protein. (540 aa)    
Predicted Functional Partners:
A0BIQ8_PARTE
Uncharacterized protein.
    
 0.866
A0CKM8_PARTE
Uncharacterized protein.
    
 0.849
PTMB.16
Uncharacterized protein.
    
 0.804
A0C5B0_PARTE
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.703
A0E4U1_PARTE
Uncharacterized protein.
   
 0.703
A0C548_PARTE
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.699
A0BL72_PARTE
Uncharacterized protein.
    
 0.669
A0CW34_PARTE
Uncharacterized protein.
    
 0.669
A0DFX5_PARTE
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.645
A0DQZ2_PARTE
S1 motif domain-containing protein.
    
 0.635
Your Current Organism:
Paramecium tetraurelia
NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4
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