Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANF55930.1Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (760 aa)    
Predicted Functional Partners:
ANF55374.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.655
ANF54543.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.650
ANF55917.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.637
ANF55799.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.568
ANF55852.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
ANF53429.1
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.516
ANF55823.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
ANF53879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.497
ANF54581.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
ANF54884.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
Your Current Organism:
Brevundimonas naejangsanensis
NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2
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