STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316ZF362-methylcitrate dehydratase. (487 aa)    
Predicted Functional Partners:
A0A316ZDL3
Putative C-8 sterol isomerase.
   
 0.733
A0A316ZC82
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 0.720
A0A316ZD39
Uncharacterized protein.
 
   
  0.720
A0A316Z5I7
Farnesyl-diphosphate farnesyltransferase.
   
 0.714
A0A316ZD86
Terpenoid synthase.
   
 0.714
A0A316ZE05
DUF663-domain-containing protein.
   
  0.714
A0A316Z5L1
Bystin-domain-containing protein.
   
 0.713
A0A316Z8H0
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.713
A0A316YZA8
Uncharacterized protein.
    
 0.711
A0A316ZFE8
KH domain-containing protein.
   
  0.703
Your Current Organism:
Tilletiopsis washingtonensis
NCBI taxonomy Id: 58919
Other names: ATCC 36489, CBS 544.50, JCM 8362, T. washingtonensis
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