A0A316ZGS9 protein (Tilletiopsis washingtonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A316ZGS9

Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (346 aa)

Predicted Functional Partners:

A0A316Z0T2

0.999

A0A316Z424

0.999

A0A316Z4G3

0.999

A0A316Z4W6

0.999

A0A316Z7A9

0.999

A0A316Z879

0.999

A0A316Z8T7

0.999

A0A316ZCA0

0.999

A0A316ZE87

0.999

A0A316ZEY2

0.999

Your Current Organism:

Tilletiopsis washingtonensis

NCBI taxonomy Id: 58919
Other names: ATCC 36489, CBS 544.50, JCM 8362, T. washingtonensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316Z0T2	A0A316Z424	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative RPL5-60S large subunit ribosomal protein L5.e.	0.999
A0A316Z0T2	A0A316Z4G3	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L7A variant 1.	0.999
A0A316Z0T2	A0A316Z4W6	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	L30e-like protein.	0.999
A0A316Z0T2	A0A316Z7A9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative RPL10-60S large subunit ribosomal protein L10.	0.998
A0A316Z0T2	A0A316Z879	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative 60S ribosomal protein L32.	0.999
A0A316Z0T2	A0A316Z8T7	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.999
A0A316Z0T2	A0A316ZCA0	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative RPL2A-ribosomal protein L8.e.	0.998
A0A316Z0T2	A0A316ZE87	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative 60s ribosomal protein L7 subunit.	0.999
A0A316Z0T2	A0A316ZEY2	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
A0A316Z0T2	A0A316ZGS9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A316Z424	A0A316Z0T2	Putative RPL5-60S large subunit ribosomal protein L5.e.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A316Z424	A0A316Z4G3	Putative RPL5-60S large subunit ribosomal protein L5.e.	60S ribosomal protein L7A variant 1.	0.999
A0A316Z424	A0A316Z4W6	Putative RPL5-60S large subunit ribosomal protein L5.e.	L30e-like protein.	0.999
A0A316Z424	A0A316Z7A9	Putative RPL5-60S large subunit ribosomal protein L5.e.	Putative RPL10-60S large subunit ribosomal protein L10.	0.999
A0A316Z424	A0A316Z879	Putative RPL5-60S large subunit ribosomal protein L5.e.	Putative 60S ribosomal protein L32.	0.999
A0A316Z424	A0A316Z8T7	Putative RPL5-60S large subunit ribosomal protein L5.e.	Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.998
A0A316Z424	A0A316ZCA0	Putative RPL5-60S large subunit ribosomal protein L5.e.	Putative RPL2A-ribosomal protein L8.e.	0.999
A0A316Z424	A0A316ZE87	Putative RPL5-60S large subunit ribosomal protein L5.e.	Putative 60s ribosomal protein L7 subunit.	0.999
A0A316Z424	A0A316ZEY2	Putative RPL5-60S large subunit ribosomal protein L5.e.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
A0A316Z424	A0A316ZGS9	Putative RPL5-60S large subunit ribosomal protein L5.e.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999