STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316ZGT8PARP-type domain-containing protein. (326 aa)    
Predicted Functional Partners:
A0A316Z548
Uncharacterized protein.
    
 0.735
A0A316Z5G8
Uncharacterized protein.
    
 0.701
A0A316Z0T0
DNA polymerase.
   
 0.700
A0A316ZIE0
ANK_REP_REGION domain-containing protein.
    
 0.691
A0A316Z671
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.682
A0A316ZBG9
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.681
A0A316Z805
ERCC4 domain-containing protein.
    
 0.680
A0A316Z6M2
Putative small nuclear ribonucleo protein F.
    
  0.673
A0A316ZA95
Putative chromatin assembly factor 1 subunit C.
    
 0.662
A0A316Z0W1
Small nuclear ribonucleoprotein Sm D2.
    
 0.656
Your Current Organism:
Tilletiopsis washingtonensis
NCBI taxonomy Id: 58919
Other names: ATCC 36489, CBS 544.50, JCM 8362, T. washingtonensis
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