STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR99030.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (210 aa)    
Predicted Functional Partners:
SDR99142.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.971
SDS63489.1
Signal transduction histidine kinase.
  
  0.891
SDR79188.1
Signal transduction histidine kinase.
  0.879
SDS41587.1
Signal transduction histidine kinase.
 
  0.876
SDS96478.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.875
SDT16425.1
Signal transduction histidine kinase.
  
  0.875
SDR80233.1
Signal transduction histidine kinase.
  
  0.874
SDT07976.1
Signal transduction histidine kinase.
  
  0.874
SDS21900.1
Signal transduction histidine kinase.
  0.871
SDS42618.1
Signal transduction histidine kinase.
  
  0.865
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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