STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS00379.1PDZ domain-containing protein. (377 aa)    
Predicted Functional Partners:
SDS00331.1
Putative hydrolase.
 
     0.705
SDS00470.1
Hypothetical protein.
       0.628
SDS42965.1
DNA polymerase III, delta subunit.
 
     0.576
SDS44287.1
DivIVA domain-containing protein.
 
     0.495
SDS46350.1
MerR HTH family regulatory protein.
  
     0.483
SDS00275.1
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
       0.477
SDS00567.1
Methyltransferase domain-containing protein.
       0.473
SDS35035.1
tRNA (adenine-58-N(1)-) methyltransferase.
  
     0.460
SDS21537.1
Membrane alanyl aminopeptidase Metallo peptidase. MEROPS family M01.
  
     0.449
SDS53335.1
Methyltransferase small domain-containing protein.
  
     0.432
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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