STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS13036.1Fibronectin type III domain-containing protein. (1774 aa)    
Predicted Functional Partners:
SDS13251.1
Transglutaminase-like superfamily protein.
 
     0.924
SDS13176.1
Protein of unknown function DUF58.
 
     0.920
SDR75240.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
 
   0.890
SDS12828.1
FHA domain-containing protein.
 
     0.880
SDS12986.1
Hypothetical protein.
 
     0.879
SDS12875.1
Serine/threonine protein kinase.
 
    0.854
SDS64188.1
Transglutaminase-like superfamily protein.
 
     0.798
SDT22773.1
Hypothetical protein.
    
  0.789
SDS64271.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
     0.778
SDT03361.1
Hypothetical protein.
    
 0.772
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.