SDS41554.1 protein (Agromyces flavus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDS41554.1

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (222 aa)

Predicted Functional Partners:

SDS41587.1

0.979

SDR80233.1

0.918

SDS63489.1

0.915

SDS42618.1

0.877

SDT07976.1

0.875

SDT16425.1

0.875

SDS96478.1

0.874

SDR99142.1

0.872

SDR79188.1

0.870

SDS21900.1

0.800

Your Current Organism:

Agromyces flavus

NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDR79188.1	SDR80233.1	SAMN04489721_0293	SAMN04489721_0315	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.443
SDR79188.1	SDS41554.1	SAMN04489721_0293	SAMN04489721_1287	Signal transduction histidine kinase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.870
SDR79188.1	SDS41587.1	SAMN04489721_0293	SAMN04489721_1288	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.785
SDR79188.1	SDS42618.1	SAMN04489721_0293	SAMN04489721_1302	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.442
SDR79188.1	SDS63489.1	SAMN04489721_0293	SAMN04489721_1641	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.444
SDR79188.1	SDT07976.1	SAMN04489721_0293	SAMN04489721_2471	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.443
SDR79188.1	SDT16425.1	SAMN04489721_0293	SAMN04489721_2657	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.813
SDR80233.1	SDR79188.1	SAMN04489721_0315	SAMN04489721_0293	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.443
SDR80233.1	SDR99142.1	SAMN04489721_0315	SAMN04489721_0606	Signal transduction histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.439
SDR80233.1	SDS21900.1	SAMN04489721_0315	SAMN04489721_0960	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.425
SDR80233.1	SDS41554.1	SAMN04489721_0315	SAMN04489721_1287	Signal transduction histidine kinase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.918
SDR80233.1	SDS96478.1	SAMN04489721_0315	SAMN04489721_2244	Signal transduction histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.442
SDR80233.1	SDT16425.1	SAMN04489721_0315	SAMN04489721_2657	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.775
SDR99142.1	SDR80233.1	SAMN04489721_0606	SAMN04489721_0315	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.439
SDR99142.1	SDS41554.1	SAMN04489721_0606	SAMN04489721_1287	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.872
SDR99142.1	SDS41587.1	SAMN04489721_0606	SAMN04489721_1288	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.792
SDR99142.1	SDS42618.1	SAMN04489721_0606	SAMN04489721_1302	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.442
SDR99142.1	SDS63489.1	SAMN04489721_0606	SAMN04489721_1641	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.442
SDR99142.1	SDT07976.1	SAMN04489721_0606	SAMN04489721_2471	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.446
SDR99142.1	SDT16425.1	SAMN04489721_0606	SAMN04489721_2657	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.447