STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS48082.1Signal peptidase I Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family. (190 aa)    
Predicted Functional Partners:
SDS48041.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
 
    0.803
SDS48017.1
G/U mismatch-specific uracil-DNA glycosylase.
       0.777
SDS48122.1
Hypothetical protein.
       0.773
SDS17247.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
     0.769
SDT29240.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
     0.750
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
 
 0.572
SDS48171.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
   0.571
SDS17375.1
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.553
SDS48334.1
2-oxoacid dehydrogenases acyltransferase (catalytic domain).
       0.533
SDS28626.1
Glutamate synthase (NADH) large subunit.
     
 0.430
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.