STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (396 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.998
SDR72949.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
     
 0.960
mtlD
D-mannitol 1-phosphate 5-dehydrogenase.
    
 0.876
SDT39581.1
Fructokinase.
     
 0.846
SDR79610.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
    
 0.845
SDS45838.1
Glucokinase.
    
 0.845
SDS96692.1
Glucokinase.
    
 0.845
SDS82407.1
Xylitol oxidase.
 
  
  0.785
SDS48733.1
Threonine dehydrogenase.
     
 0.765
SDS93739.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
     
 0.765
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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