STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS93046.1Lysophospholipase L1. (209 aa)    
Predicted Functional Partners:
SDS05577.1
Hypothetical protein.
  
  0.700
SDS93089.1
Hypothetical protein.
       0.671
SDS93210.1
Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain.
       0.666
SDS10438.1
Hypothetical protein.
   
  0.597
SDT32237.1
Hypothetical protein.
   
  0.597
SDT34062.1
MT0933-like antitoxin protein.
   
  0.597
SDS93259.1
Hypothetical protein.
       0.488
SDS93308.1
Subtilase family protein; Belongs to the peptidase S8 family.
 
     0.421
SDR78659.1
Cna protein B-type domain-containing protein.
    
  0.403
SDR78693.1
Hypothetical protein.
    
  0.403
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.