STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS93583.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (284 aa)    
Predicted Functional Partners:
SDS93625.1
L-fuconolactonase.
 
     0.875
SDS93522.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  0.868
SDS93475.1
L-rhamnose mutarotase.
 
     0.806
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  0.778
SDS74912.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
  0.754
SDS74764.1
Succinate dehydrogenase subunit C.
   
 
  0.751
SDS74794.1
Succinate dehydrogenase subunit D.
   
 
  0.751
SDS74836.1
Succinate dehydrogenase subunit A.
  
 
  0.691
SDS99266.1
Succinate dehydrogenase / fumarate reductase flavoprotein subunit.
  
 
  0.691
SDS83269.1
Malate synthase; Belongs to the malate synthase family.
    
  0.629
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.