STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT09199.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (212 aa)    
Predicted Functional Partners:
SDT09137.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Non-canonical start codon; manually curated.
 0.983
SDS63489.1
Signal transduction histidine kinase.
 
  0.889
SDR80233.1
Signal transduction histidine kinase.
 
  0.888
SDS42618.1
Signal transduction histidine kinase.
 
  0.877
SDT07976.1
Signal transduction histidine kinase.
 
  0.874
SDS96478.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.872
SDT16425.1
Signal transduction histidine kinase.
  
  0.872
SDR99142.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.863
SDR79188.1
Signal transduction histidine kinase.
 
  0.862
SDS41587.1
Signal transduction histidine kinase.
 
  0.827
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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