STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT11066.1Very-short-patch-repair endonuclease. (311 aa)    
Predicted Functional Partners:
SDT02751.1
Cystathionine beta-synthase.
    
  0.575
SDT11121.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
     0.558
SDS92116.1
HNH endonuclease.
  
     0.482
SDT39363.1
HNH endonuclease.
  
     0.465
SDS28626.1
Glutamate synthase (NADH) large subunit.
   
    0.457
SDT13650.1
Protein of unknown function.
  
     0.410
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.