STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT20019.1ABC-2 type transport system permease protein. (275 aa)    
Predicted Functional Partners:
SDT20000.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.939
SDS65665.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.809
SDR88440.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.766
SDT20056.1
Phytoene dehydrogenase-related protein.
       0.693
SDT19964.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
 
     0.576
SDS65629.1
ABC-2 type transport system permease protein.
  
  
 
0.536
SDR88370.1
ABC-2 type transport system permease protein.
  
  
 
0.512
SDT07903.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.511
SDS75985.1
Lipooligosaccharide transport system ATP-binding protein.
 
 
  0.441
SDT07940.1
ABC-2 type transport system permease protein.
  
  
  0.432
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.