STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT22159.1Potassium uptake protein, TrkH family. (449 aa)    
Predicted Functional Partners:
SDT22130.1
Trk system potassium uptake protein TrkA.
   0.985
SDT14011.1
Trk system potassium uptake protein TrkA.
   0.940
SDT19596.1
SSU ribosomal protein S6P modification protein; Belongs to the RimK family.
  
   0.752
SDS67766.1
Voltage-gated potassium channel.
  
   0.729
SDS97433.1
Voltage-gated potassium channel.
  
   0.729
SDT22100.1
Putative endopeptidase.
       0.574
SDT22222.1
Putative efflux protein, MATE family.
       0.549
SDT22185.1
Uncharacterized membrane protein YccF, DUF307 family.
       0.538
SDT22069.1
Beta-lactamase class A.
       0.413
SDT22245.1
Putative auto-transporter adhesin, head GIN domain.
       0.410
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.