Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDR81091.1 | SDT29286.1 | SAMN04489721_0331 | SAMN04489721_3028 | Colicin V production protein. | Hypothetical protein. | 0.780 |
SDR81091.1 | guaB | SAMN04489721_0331 | SAMN04489721_0253 | Colicin V production protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.456 |
SDR81091.1 | rpsF | SAMN04489721_0331 | SAMN04489721_2924 | Colicin V production protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.639 |
SDR81091.1 | rpsL | SAMN04489721_0331 | SAMN04489721_0188 | Colicin V production protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.444 |
SDR81091.1 | secA | SAMN04489721_0331 | SAMN04489721_1749 | Colicin V production protein. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.482 |
SDT29286.1 | SDR81091.1 | SAMN04489721_3028 | SAMN04489721_0331 | Hypothetical protein. | Colicin V production protein. | 0.780 |
SDT29286.1 | SDT32490.1 | SAMN04489721_3028 | SAMN04489721_3150 | Hypothetical protein. | Hypothetical protein. | 0.778 |
SDT29286.1 | guaA | SAMN04489721_3028 | SAMN04489721_0263 | Hypothetical protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.790 |
SDT29286.1 | guaB | SAMN04489721_3028 | SAMN04489721_0253 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.782 |
SDT29286.1 | rplW | SAMN04489721_3028 | SAMN04489721_0196 | Hypothetical protein. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.732 |
SDT29286.1 | rpsD | SAMN04489721_3028 | SAMN04489721_1021 | Hypothetical protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.741 |
SDT29286.1 | rpsF | SAMN04489721_3028 | SAMN04489721_2924 | Hypothetical protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.760 |
SDT29286.1 | rpsL | SAMN04489721_3028 | SAMN04489721_0188 | Hypothetical protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.734 |
SDT29286.1 | rpsN | SAMN04489721_3028 | SAMN04489721_2958 | Hypothetical protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.728 |
SDT29286.1 | secA | SAMN04489721_3028 | SAMN04489721_1749 | Hypothetical protein. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.738 |
SDT32490.1 | SDT29286.1 | SAMN04489721_3150 | SAMN04489721_3028 | Hypothetical protein. | Hypothetical protein. | 0.778 |
guaA | SDT29286.1 | SAMN04489721_0263 | SAMN04489721_3028 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Hypothetical protein. | 0.790 |
guaA | guaB | SAMN04489721_0263 | SAMN04489721_0253 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.999 |
guaA | rpsD | SAMN04489721_0263 | SAMN04489721_1021 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.817 |
guaA | rpsF | SAMN04489721_0263 | SAMN04489721_2924 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.787 |
page 1 of 4