STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutIImidazolonepropionase. (412 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.999
SDT36539.1
Histidine ammonia-lyase.
 
  
 0.992
SDT36044.1
Formiminoglutamase; Belongs to the arginase family.
 
 
 0.976
SDS66975.1
Arginase; Belongs to the arginase family.
  
 
 0.699
SDT36517.1
Peptidase family M23.
       0.551
SDS87342.1
Agmatinase; Belongs to the arginase family.
  
 
 0.550
SDT35936.1
GntR family transcriptional regulator.
  
 
 0.530
SDT36557.1
DNA-binding transcriptional regulator, IclR family.
 
  
  0.526
SDS00688.1
Formiminotetrahydrofolate cyclodeaminase.
  
 
  0.468
Your Current Organism:
Agromyces flavus
NCBI taxonomy Id: 589382
Other names: A. flavus, Agromyces flavus Chen et al. 2011, Agromyces sp. CPCC 202695, CCM 7623, CPCC 202695, KCTC 19578
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