STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW79219.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.664
SDX63590.1
Amino acid adenylation domain-containing protein.
   
 0.617
SDY90253.1
Amino acid adenylation domain-containing protein.
   
 0.590
SDX36422.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.588
SDW79251.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
    
  0.581
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.553
SDX63787.1
Surfactin synthase thioesterase subunit.
   
 0.542
SDW79285.1
DNA-binding transcriptional regulator, AcrR family.
       0.511
SDZ39186.1
Glycosyltransferase, GT2 family.
  
 
 0.494
SDY37312.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
    
  0.485
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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