STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW31386.1Glutamate transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (274 aa)    
Predicted Functional Partners:
SDZ08186.1
Glutamate transport system permease protein.
 
 0.989
SDZ08207.1
Glutamate transport system permease protein.
 
 0.965
SDZ08143.1
Glutamate transport system ATP-binding protein.
 
 0.952
SDY88530.1
Polar amino acid transport system ATP-binding protein.
 
 0.917
SDX27251.1
Polar amino acid transport system ATP-binding protein.
 
 0.915
SDY88554.1
Polar amino acid transport system permease protein.
 
 0.901
SDX27287.1
Polar amino acid transport system permease protein.
 
 0.900
SDX22098.1
Polar amino acid transport system ATP-binding protein.
 
 0.887
SDX22125.1
Polar amino acid transport system permease protein.
 
 0.836
SDW24636.1
Polar amino acid transport system substrate-binding protein.
  
     0.759
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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