STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX69895.1Aspartate/methionine/tyrosine aminotransferase. (394 aa)    
Predicted Functional Partners:
SDY84119.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.852
SDZ09570.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.852
SDY44776.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.721
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.692
SDX73322.1
2-oxoglutarate decarboxylase.
   
 0.691
SDY60515.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.684
SDX74743.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
  
 0.683
SDX69954.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
  
 0.678
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
 
 0.675
SDX15343.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 0.671
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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