STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX73596.1Protein of unknown function DUF43. (462 aa)    
Predicted Functional Partners:
SDY38275.1
Hypothetical protein.
  
     0.666
SDX16625.1
Hypothetical protein.
  
     0.629
SDY15930.1
EspG family protein.
  
     0.620
SDX73511.1
Osmoprotectant transport system permease protein.
       0.582
SDX73539.1
Osmoprotectant transport system permease protein.
       0.582
SDX73484.1
Osmoprotectant transport system substrate-binding protein.
       0.577
SDX73575.1
Osmoprotectant transport system ATP-binding protein.
       0.564
SDY12764.1
Hypothetical protein.
  
     0.556
SDY00822.1
PPE family protein.
  
     0.538
SDY74125.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.501
Your Current Organism:
Amycolatopsis xylanica
NCBI taxonomy Id: 589385
Other names: A. xylanica, Amycolatopsis sp. CPCC 202699, Amycolatopsis xylanica Chen et al. 2010, CCM 7627, DSM 45285, KCTC 19581, strain CPCC 202699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.